GeneSpring Analysis Platform
Contextualize Data with GeneSpring
Analyze and compare data from multiple applications. Collaborate with colleagues.
Gain new perspectives on the data you already have.
Agilent’s industry-standard GeneSpring Software Platform opens new doors, enabling analysis, comparisons, and visualization of data from multiple applications. GeneSpring offers a broad range of sophisticated tools for analyzing and managing data derived from a diverse set of genomic platforms. By triangulating results from mRNA transcripts, genotype, protein, metabolite, and other data types, the GeneSpring Analysis Platform identifies genes or pathways that are truly relevant to your biological question. GeneSpring GT is a desktop analysis workbench for analyzing high-volume, high-density genotyping data. GeneSpring GX is the industry-standard gene expression software enabling analysis, comparisons, visualization, and management of data from multiple applications. Designed to break through bottlenecks in data management and analysis processes, GeneSpring can import and analyze data from any array source. The seamless integration of GeneSpring components and application-specific analytical tools such as Feature Extraction Software, CGH Analytics, ChIP Analytics provides a comprehensive solution for microarray data visualization and analysis.
Figure 1.Typical workflow for integrating gene expression profiling and genotype analysis.
(A) Combined gene expression and genotype gene list-based pathway enrichment analysis identifies four canonical pathways as shown. (B) The Agilent Literature Search tool extracts associations from published literature. (C) Literature-based extended association network for the four canonical pathways (from above) identified by combined genotype and gene expression datasets. (D) Subnetwork of interest identified from the extended network in (C) using combined SNP LOD score and gene expression p-values.
Reference: Efficient Method for Isolation of High Quality Concentrated Cellular RNA with Extremely Low Levels of Genomic DNA Contamination.
Agilent Publication Number 5989-0322EN.
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GeneSpring GT | GeneSpring GX | GeneSpring MS
GeneSpring Workgroup
GeneSpring GT
A desktop analysis workbench for analyzing high-volume, high-density genotyping data.
GeneSpring GX
A powerful visualization and analysis solution designed for use with expression data.
GeneSpring MS
A comprehensive analytical tool for mass spectrometry that enables the rapid discovery of protein and metabolite biomarkers.
GeneSpring Workgroup
A robust data management and analysis environment for systems biology.
For research use only and not for use in diagnostic procedures.